How to file independent contractor taxes

How to file independent contractor taxes

What to know about forms, deadlines, and deductions as a 1099 worker

Meg Furey-Marquess
By Meg Furey-Marquess
Contributing Writer
Dec 9, 2025
12 min read
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When you work as a freelancer, small business owner or independent contractor, you get paid differently and pay independent contractor taxes differently. Instead of a W-2 employee whose taxes are pulled from their pay automatically, you’ll often receive a 1099 form from clients — but either way, tax planning and payments fall to you..

Here’s what you need to know to pay taxes as an independent contractor and avoid penalties come tax season.

Jump ahead to learn:

How taxes work when you’re paid as an independent contractor

When you work for someone else: your employer handles the tax withholdings. State taxes, federal taxes, Social Security, and Medicare are pulled out of every paycheck automatically.

But as an independent contractor, you receive the full payment for your work with no tax withholding—which means you’re responsible for handling all of your self-employment income and reporting it accurately to the IRS.

This isn’t a small group either. As of 2025, roughly 73 million people in the U.S. work independently, according to MBO Partners. That means millions of contractors are managing these tax responsibilities on their own every year.

The extra cash in hand might look great at first, but it also means you need to plan ahead. Most financial professionals recommend setting aside 25% to 30% of your income for taxes so you’re not caught off guard at filing time.

Many contractors keep that money in a separate business bank account. It’s a simple way to stay disciplined — and avoid scrambling when quarterly payments or tax deadlines roll around.

 

W-2 employee

Independent contractor (1099)

How taxes are withheld

Employer automatically withholds taxes

No taxes withheld — contractor pays directly

Forms received

W-2

1099-NEC or 1099-MISC

Tax payments

Taken out of each paycheck

Quarterly estimated tax payments

Self-employment tax

Employer pays 50%

Contractor pays full 15.3%

Deductible business expenses

Limited (mostly not allowed)

Can deduct eligible business expenses on Schedule C

What taxes do independent contractors have to pay?

Independent contractor taxes include self-employment tax and income tax — the two main tax responsibilities you’re required to pay when you work for yourself. When you’re self-employed, you’re essentially running your own payroll department.

Self-employment tax

Self-employment tax is the tax you pay toward Social Security and Medicare when you work for yourself. It covers your full FICA (Federal Insurance Contributions Act) contribution because there’s no employer splitting the cost.

While traditional employees split these costs with their employer, you cover the full 15.3%, which breaks down to:

  • 12.4% for Social Security
  • 2.9% for Medicare

The good news is that the Internal Revenue Service (IRS) lets you deduct half of your self-employed contributions as a business expense when calculating your adjusted gross income.

Income tax

Income tax is the tax you pay on your annual earnings after deductions. It includes all forms of compensation.

Examples of taxable income for contractors:

  • Cash payments from clients
  • Payments via apps (PayPal, Venmo, Cash App)
  • Credit/debit card transactions
  • Cryptocurrency / digital currency payments
  • Goods or property received instead of cash
  • Tips or bonuses

For a complete list of what counts as taxable and non-taxable income, visit the IRS website before filing taxes as an independent contractor. 

How to pay taxes as an independent contractor

Independent contractors pay taxes by making quarterly estimated tax payments to the IRS. Since no employer withholds taxes for you, you pay as you go throughout the year.

It’s called an “estimated” payment because you estimate how much income you’ll earn and pay taxes based on the estimate.

You’ll need to make quarterly tax payments if you:

  • File as a sole proprietor, partner, or S corporation; and
  • Expect to owe $1000 or more when you file your return

When to pay estimated taxes

Estimated taxes are paid four times a year. Mark these important dates on your calendar since missing a payment could result in penalties:

  • April 15 (for January to March income)
  • June 15 (for April to May income)
  • September 15 (for June to August income)
  • January 15 of the following year (for September to December income)

Calculate your independent contractor tax payments

When it comes to calculating your estimated tax payments, you’ve got a few options:

  • Form 1040-ES, which includes a worksheet and vouchers for mail-in payments (or you can pay online).
  • Online estimated tax calculators (like this one from Turbotax).
  • Accounting software that does double duty by calculating the tax and filing returns.  

You’ll get a tax refund if you’ve paid too much estimated tax. And if you pay too little, you’ll owe the difference when you file your annual return.

Common IRS forms for independent contractor taxes

Independent contractors use a few key IRS forms to report income, calculate taxes and claim deductions. Here’s what each one does and when you need it.

1099 contractor forms

Independent contractors get 1099s instead of W-2s. Clients who pay you $500 or more during the year generally must send either Form 1099-NEC (nonemployee compensation) or Form 1099-MISC.

In a perfect world, adding up all of the 1099 forms you receive will equal your annual gross income. But don’t rely solely on your 1099s. You must track all income yourself — you’re responsible for reporting everything you earned, even if you don’t receive a 1099. This includes payments under $600 and income from clients who fail to send forms.

Form 1040

Form 1040 is the main federal tax return independent contractors use to report income, deductions, and tax payments. Many of the schedules below flow into it.

Schedule C 

Schedule C is the form independent contractors use to report business income and deductible expenses. It determines whether your business made a profit or loss.

It’s also where you’ll list valuable business deductions to reduce your taxable income. The tax deductions you can claim vary based on your type of business, but typically include:

  • Industry-specific equipment and tools
  • Office furniture and computers
  • Phone and internet expenses
  • Business insurance premiums

Business insurance often fits naturally into this section because it’s considered an ordinary and necessary business expense. 

For example, general liability insurance can help protect you if someone gets hurt or their property is damaged because of your work. Professional liability insurance can help cover claims that you made an error that caused financial losses. And if you have business equipment, inventory, or a workspace, commercial property insurance can help protect those assets.

These premiums are often deductible on Schedule C, no matter your profession. For example, licensed contractors can deduct the cost of tools and materials used to complete jobs, along with premiums for their contractor insurance. Fitness trainers can deduct personal trainer insurance premiums and the fitness equipment they use with clients.

At the end of the year, it’s a good idea to review your coverage to make sure it matches any changes in your business — new clients, services, equipment or locations. Keeping your insurance records organized will make it easier to claim these deductions when you file.

Remember: You can also deduct the employer portion of FICA taxes and can typically deduct any business insurance premiums you pay, no matter what type of business you run.

Tip: Learn about 16 amazing tax deductions independent contractors may qualify for. These include deductions for office expenses, car mileage, health insurance, and even hiring a certified public accountant (CPA).

Schedule SE

Schedule SE form calculates how much self-employment tax you owe for Social Security and Medicare. It’s based on your net profit from Schedule C. Here are the key points:

  • You’ll pay this tax on your net earnings (profit calculated on Schedule C).
  • The total rate is 15.3% (12.4% for Social Security, 2.9% for Medicare).
  • This tax applies regardless of age, even if you’re already receiving benefits.
  • You can deduct half of your self-employment tax on Form 1040.

Changes for independent contractor taxes for 2026 and beyond

Tax rules for independent contractors shift frequently, and several recent updates may affect your 2026 filing. Here are the big ones to keep an eye on:

The Qualified Business Income (QBI) deduction continues

The Qualified Business Income (QBI) deduction — also known as Section 199A — currently allows many independent contractors and small business owners to deduct up to 20% of their qualified business income.

Under previous law, this deduction was scheduled to expire after the 2025 tax year. However, recent legislation removed the sunset provision, meaning the QBI deduction continues beyond 2025 under current rules.

That said, eligibility can get complicated if your income is high or your business falls into a “specified service trade or business” (SSTB). A tax professional can help you determine how the deduction applies to your situation.

Ongoing changes to payment platform reporting (Form 1099-K)

Reporting rules for Form 1099-K — the form used by payment platforms such as PayPal, Venmo and Stripe — have been in flux over the last few years.

Historically, processors issued a 1099-K only if you received over $20,000 and had more than 200 transactions. Congress attempted to lower that threshold, and the IRS has delayed and revised implementation multiple times.

Because requirements continue to shift, the safest approach is to check the most current 1099-K guidance on the IRS’s site or speak with a tax professional if you use payment apps, credit card processors, or online marketplaces like Upwork or Etsy.

What do I do if I get a 1099 Form from a client?

If you receive a 1099 form, use it to confirm the income you’ve already tracked for your business. It’s a receipt of payments—not a replacement for your own records.

If your small business or sole proprietorship is a limited liability company (LLC), chances are you’re paying taxes on your earnings as a pass-through entity. Your taxable income comes from your earnings from your services or products, and your accounting software already tracks all the money you’ve earned through invoices — the 1099s are just confirmation of income you’ve already recorded.

Always consult tax professionals about tax-related questions, especially on how you classify your business. 

How to file taxes as an independent contractor

You file independent contractor taxes by gathering your income records, organizing your expenses, and submitting Form 1040 along with Schedule C and Schedule SE. Here’s what that process looks like step by step.

1. Gather your documents

Most independent contractors who earn money from their work will need to file a federal income tax return, especially if they have $500 or more in net self-employment income.

If you’re running your business as a sole proprietor, your default taxpayer identification number is your Social Security number (SSN). But if you have employees and applied for an employer identification number (EIN), you’ll need this number to meet tax requirements.

Gather all of the necessary documents for both your personal and business income. This might include:

  • All 1099 forms from clients
  • Records of income without 1099s
  • Your Social Security number (or EIN)
  • Income records from paid invoices

Remember, even if the people you work for are sloppy with their paperwork, the IRS makes it your responsibility to report payments and income you receive during the year. 

2. Organize your records

Gather your income documents first — then tackle those expenses. Here’s where solid record-keeping pays off. Every receipt, proof of transaction, and record counts when it’s time to claim deductions and lower your tax liability.

Just make sure to keep receipts. If you get audited, the IRS will want to see them.

3. File taxes yourself via a tax professional

We recommend working with a licensed tax professional to ensure you file correctly and help avoid IRS penalties. Plus, a pro can give you advice on your estimated taxes or setting up your accounting system.

But maybe your business taxes are pretty simple, or your business hasn’t changed much from last year. If that’s the case, you could take a crack at filing yourself.

When you go this route, you can mail or submit your tax forms online. You can download the forms from the IRS’s site if you choose the paper route. Local libraries and post offices often have free copies of the form for taxpayers, too.

You can also e-file directly by creating an account on the IRS’s website or using commercial tax preparation software.

How NEXT helps independent contractors grow their business

NEXT provides fast, easy and affordable business insurance options for self-employed workers and small business owners.

Start our free instant quote online to review your options, purchase coverage and get your certificate of insurance if you need one. The entire process takes about 10 minutes.

Our licensed, U.S.-based insurance advisors are standing by to help if you have insurance questions.

And there’s good news — your business insurance expenses may be considered a tax write-off for your business.

Start a free quote with NEXT today.

NEXT does not provide tax, legal or accounting advice. This material has been prepared for informational purposes only, and is not intended to provide, and should not be relied on for, tax, legal or accounting advice. You should consult your own tax, legal and accounting advisors for personalized guidance.

Meg Furey-Marquess
About the author

Meg Furey-Marquess is an experienced writer from Austin, Texas. With a special interest in both small business and personal finance, she believes that big ideas often start small. With a knack for narrative and a relentlessly curious nature, her goal is to amplify the “little guys.”

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